Difference between revisions of "CompSciWeek5"
From Predictive Chemistry
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= Class 1: Effective Design = |
= Class 1: Effective Design = |
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| + | * Code walk-through, parsing and using graphs |
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* Structured Code, Bioinformatics example from AOS Book |
* Structured Code, Bioinformatics example from AOS Book |
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* Code Testing |
* Code Testing |
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Revision as of 12:07, 22 September 2014
Reading:
- Beginning Python, Chapters 7-8 and 16 (on Testing)
- Bioinformatics Code Design
Class 1: Effective Design
- Code walk-through, parsing and using graphs
- Structured Code, Bioinformatics example from AOS Book
- Code Testing
- Source Code Versioning
- basic git
Class 2: Using HPC Resources
- Accessing binaries and libraries, using modules
- Using scratch space
- Submitting a job script
- Managing queued jobs
- Advanced scripting tips and tricks
- awk
