Difference between revisions of "CompSciWeek6"

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(Created page with "Reading: * Beginning Python - skim. chapters 8-14 (use as reference material) ** see expecially urlopen on p. 300, forks and threads on p. 304 * Beginning Python - Chapter 15 (We…")
 
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Reading:
 
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= Reading (shared with Week 7) =
 
* Beginning Python - skim. chapters 8-14 (use as reference material)
 
* Beginning Python - skim. chapters 8-14 (use as reference material)
 
** see expecially urlopen on p. 300, forks and threads on p. 304
 
** see expecially urlopen on p. 300, forks and threads on p. 304
 
* Beginning Python - Chapter 15 (Web services)
 
* Beginning Python - Chapter 15 (Web services)
   
= Class 1: The Git Revision Control System =
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= Class 1: Effective Design =
* Repository structure
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* Code walk-through, parsing and using graphs
** git clone, init
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* Structured Code, Bioinformatics example from AOS Book
** examining git objects
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* Code Testing
** code branches, git branch, status, checkout
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* Source Code Versioning
* Version histories and diff-s
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** basic git
** git diff, patch
 
* Working with remote repo-s
 
** git commit, pull, push
 
   
= Class 2: Parallel Programming =
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= Class 2: Using HPC Resources =
* Parallel complexity - sum / min / max
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* Accessing binaries and libraries, using modules
* Parallel caching
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* Using scratch space
* Eigenvalue computation - the "google" algo.
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* Submitting a job script
* Web Services
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* Managing queued jobs
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* Advanced scripting tips and tricks
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** awk

Revision as of 11:06, 29 September 2014

Reading (shared with Week 7)

  • Beginning Python - skim. chapters 8-14 (use as reference material)
    • see expecially urlopen on p. 300, forks and threads on p. 304
  • Beginning Python - Chapter 15 (Web services)

Class 1: Effective Design

  • Code walk-through, parsing and using graphs
  • Structured Code, Bioinformatics example from AOS Book
  • Code Testing
  • Source Code Versioning
    • basic git

Class 2: Using HPC Resources

  • Accessing binaries and libraries, using modules
  • Using scratch space
  • Submitting a job script
  • Managing queued jobs
  • Advanced scripting tips and tricks
    • awk